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πŸ”¬ Analysis Workflows

A complete guide to the dnbc4tools analysis pipelines

🧬 Analysis Pipelines

Analysis Type Description & Key Features Documentation
🧬 Single-Cell RNA Workflow: Gene expression profiling at single-cell resolution.
  • High-throughput processing for large datasets
  • Dual-species support (human-mouse)
  • 5' and 3' chemistry compatibility
  • Automated cell identification
 ➑️ English Guide
➑️ δΈ­ζ–‡ζŒ‡ε—
πŸ§ͺ Single-Cell ATAC Workflow: Chromatin accessibility profiling at single-cell resolution.
  • Advanced fragment processing
  • TSS enrichment analysis
  • Peak-based cell identification
  • Mitochondrial/chloroplast filtering
 ➑️ English Guide
➑️ δΈ­ζ–‡ζŒ‡ε—
🦠 Single-Cell VDJ Workflow: Immune receptor repertoire profiling (requires 5' RNA-seq data).
  • Integrated with 5' RNA analysis
  • Advanced assembly algorithms
  • TCR and BCR support
  • Clonotype identification
 ➑️ English Guide
➑️ δΈ­ζ–‡ζŒ‡ε—

πŸ“š Command Parameters

Click to expand parameter documentation
Category Resource
βš™οΈ General Parameters Parameter Reference / 参数参考
🧬 RNA Parameters RNA Parameters Guide / RNA 参数
πŸ§ͺ ATAC Parameters ATAC Parameters Guide / ATAC 参数
🦠 VDJ Parameters VDJ Parameters Guide / VDJ 参数

This document serves as a top-level index. For detailed file descriptions, please refer to the analysis-specific guides linked above.