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πŸ“‹ dnbc4tools Parameter Reference

This page provides a central reference for all parameter documentation for the dnbc4tools analysis pipelines.

πŸ”¬ Analysis Pipelines

Analysis Type Description & Key Commands Documentation
🧬 Single-Cell RNA Parameters for gene expression analysis.
  • run: Main analysis pipeline
  • mkref: Reference building
  • multi: Multi-sample aggregation
 ➑️ English Guide
➑️ δΈ­ζ–‡ζŒ‡ε—
πŸ§ͺ Single-Cell ATAC Parameters for chromatin accessibility analysis.
  • run: Main analysis pipeline
  • mkref: Reference building
  • multi: Multi-sample aggregation
 ➑️ English Guide
➑️ δΈ­ζ–‡ζŒ‡ε—
🦠 Single-Cell VDJ Parameters for immune repertoire analysis.
  • run: Main analysis pipeline
 ➑️ English Guide
➑️ δΈ­ζ–‡ζŒ‡ε—
πŸ”§ Utility Tools Parameters for helper and utility scripts.
  • mkgtf: GTF file manipulation
  • bam2fastq: BAM to FASTQ conversion
  • chromsplit: Genome splitting
  • fqsubC4: FASTQ subsequence extraction
 ➑️ English Guide
➑️ δΈ­ζ–‡ζŒ‡ε—

πŸ“š General Resources & Support

Click to expand project documentation and support links
Category Resource
πŸš€ Getting Started Quick Start Guide
πŸ“‚ Output Files Output File Reference
πŸ”¬ Workflow Details Analysis Workflows
πŸ”§ Setup Installation Guide
πŸ†˜ Support Report an Issue on GitHub

This document serves as a top-level index. For detailed parameter descriptions, please refer to the analysis-specific guides linked above.